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Management of plant diseases using genetic engineering, biological control and secondary metabolites.
Genetic engineering: Plants use two major immunity systems to defend themselves against pathogens.  In one system, conserved pathogen-associated molecular patterns (PAMP) are recognized by plants through “Pattern Recognition Receptors” (PRRs) leading to the activation of defense responses. Pathogens inactivate PAMP-triggered immunity by delivering virulent disease causing effectors proteins into cells.  Plants counteract by recognizing these effectors through resistance (R) proteins, which leads to a more rapid and robust defense system called effector-triggered immunity.  Plant defenses include cell wall reinforcement, hypersensitive response, and expression of many defense genes including pathogenesis related (PR) genes.  Introgression of resistant genes from wild relatives using traditional breeding methods is not efficient, especially in woody ornamentals, because of difficulty in sexual hybridization and potential loss of desirable traits.  In addition, the gene-for-gene type R genes are in most cases rapidly overcome by new virulent pathogen strains.  Current crop transformations for fungal resistance have been using individual defense genes, which in most cases have resulted in partial resistance.  Durable and broad-spectrum resistance can be accomplished with heterologously expressing multiple Pattern Recognition Receptors (PRRs) along with other genes in one line.  We are transforming several PRRs and other defense-related genes in unison into several economically important crops including tomatoes, Geranium and roses.  Since, our approach is expected to provide broad-spectrum resistance, wherever feasible, transgenic lines will be tested against other pathogens too.

Biological control: The occurrence of fungicide-resistant pathogens and the potential adverse effects of pesticides on the environment require using alternative low-risk strategies such as biological control agents (BCA) for disease control.  Currently, however, BCAs are not used extensively in integrated disease management programs of crops.  BCAs are wide spread in the environment and their deployment for controlling crop pathogens and diseases will reduce exposure of growers and consumers to chemicals and will mitigate fungicide-associated health and environmental risks. Our goal is to conduct research on several commerciall and experimental BCAs against major fungal pathogens.

Secondary Metabolites mining: Several medicinal plants and microorganisms are rich sources of bioactive compounds. Although these sources are primarily used for discovering human medicines, they also hold promise for identifying antimicrobial compounds that target plant pathogens. In collaboration with scientists in China, our lab are screening several traditional chinese medicinal plants for secondary metabolites that display antimicrobial activity. Ultimate goal of this project is to diversify repertoire of chemistries for controlling plant diseases and to mitigate the impact of appearance of fungicide-resistant strains of plant pathogens on agriculture.

Synthesis and application of Nanoparaticles for the control of plant diseases: In this project we explore various medicinal plants for the production of nanoparticles. These nanoparticles are then physically characterized using ultra violet-visible (UV-Vis) spectroscopy, dynamic light scattering (DLS), transmission electron microscopy and energy-dispersive X-ray(EDX) analysis. Synthesized nanoparicles are then evaluated for control of plant pathogens in vitro and in planta.

 

 

 

 

ls2Genetic engineering for disease resistance. FLS2-YFP (Green) is targeted to the plasma membrane (PM) in transgenic Nicotiana and Arabidopsis. Stomata (St) display cytoplasmic FLS2-YFP-enriched vesicles too.

 

CASnippets from biological control experiments in Ali Lab. F. oxysporum grown on a PDA plate without Bacillus (control, left panel) and with Bacillus (right panel); white mycelial growth in the center is inhibited substantially by Bacillus (four tan spots).